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Britney

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Atoms to Algorithms

A Brief Overview of Cellular Communication

How do cells communicate with each other? Learn about the basics of cellular communication — its components & processes.

Aug 25, 2023

A Brief Overview of Cellular Communication

Aug 25, 2023

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Atoms to Algorithms

Introduction to scRNA-seq: Understanding Raw RNA Sequencing Data

Single-Cell RNA Sequencing Basics for the Beginner Bioinformatician

Aug 2, 2023

Introduction to scRNA-seq: Understanding Raw RNA Sequencing Data

Aug 2, 2023

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Atoms to Algorithms

Welcome to Atoms to Algorithms

My Journey and The Origins of This Blog

Nov 24, 2024

Welcome to Atoms to Algorithms

Nov 24, 2024

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Atoms to Algorithms

Counting DNA Nucleotides: A Python Tutorial for Genetic Analyses

DNA Structure in Genetics and Bioinformatics

Aug 2, 2024

Counting DNA Nucleotides: A Python Tutorial for Genetic Analyses

Aug 2, 2024

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Atoms to Algorithms

Everything You Need to Know About Python: Data Types, Expressions, and Variables

Some Notes on Data Types, Expressions, and Variables in Python

Feb 15, 2024

Everything You Need to Know About Python: Data Types, Expressions, and Variables

Feb 15, 2024

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Atoms to Algorithms

Unraveling the Advantages and Challenges of Big Data in Biology

From Human Genome Project to Data Biosphere

Jan 24, 2024

Unraveling the Advantages and Challenges of Big Data in Biology

Jan 24, 2024

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Atoms to Algorithms

Paper-A-Day: A large language model for electronic health records

Unveiling the Potential of a Large Clinical Transformer Model | Some notes on GatorTron, a large language model for EHRs.

Jan 17, 2024

Paper-A-Day: A large language model for electronic health records

Jan 17, 2024

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Atoms to Algorithms

Uncovering Challenges and Solutions in Cohort-Level Variant Analysis

Some notes on joint genotyping and full joint-calling strategies.

Oct 3, 2023

title page. uncovering challenges and solutions in cohort-level variant analysis. some notes on joint genotyping and full joint-calling strategies. an image of a group of individuals making up a cohort.

Oct 3, 2023

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Atoms to Algorithms

ELIF: The Dice Similarity Coefficient

Metrics for Evaluating Performance of Segmentation Models. Some notes on applications of dice similarity coefficient and calculations.

Sep 25, 2023

image of applications of segmentation algorithms. two rows of mri images labeled with regions of brain tumors. segmentation can be used to predict various cranial structures such as brain tumors from mri images.

Sep 25, 2023

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Atoms to Algorithms

Exploring the Challenges and Quality Metrics for Accurate Genetic Variant Identification

Some notes on population-level variant calling and callset quality metrics.

Sep 20, 2023

Figure showing how to calculate recall and precision. A table with four quadrants where the first column corresponds to actual positive, second column corresponds to actual negative, first row corresponds to positive prediction, and second row corresponds to negative prediction. Within the quadrants, there is true positive, false positive, false negative, and true negative. recall equals tp / tp + fn. precision equals tp / tp + fp.

Sep 20, 2023

Britney

Britney

Hi! I like to write about AI, deep learning, and machine learning as they apply to healthcare a biology. If you're into this stuff too, follow along.

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